Necessary commands for the 2025 Datathon Summer School sessions will be posted here.
Environment: pandas-env
cp -r /mnt/efs/data/notebooks/day1/EMBEDv2/ ~/
Environment: roi-detection
Copy the files to your home directory
cp -r /mnt/efs/data/notebooks/day1/embed_detection ~/
Create a symlink between the source data and your home directory
ln -s /mnt/efs/data/datasets/EMBED_detection ~/embed_detection/data
Environment: pandas-env
cp -r /mnt/efs/data/notebooks/day1/mrkr ~/
Environment: linear_probing
cp -r /mnt/efs/data/notebooks/day1/emory-cxr ~/
Environment: linear_probing
cp -r /mnt/efs/data/notebooks/day2/linear-probing/ ~/
https://github.com/f10409/BiomedParse_demo
https://github.com/f10409/MedSigLIP_demo
https://github.com/f10409/MedGemma_demo
Create a symlink between the source data and your home directory
ln -s /mnt/efs/data/datasets/mimiciv ~/mimiciv
Copy the notebooks to your home directory
cp -r /mnt/efs/data/notebooks/day3/MIMIC_ARIMA_TFT_day3.ipynb ~/
cp -r /mnt/efs/data/notebooks/day3/B2AI_voice_analysis.ipynb ~/